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Apple Health MCP Server

by neiltron

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About

Apple Health MCP Server enables SQL-based querying and analysis of Apple Health data exported from iOS devices. Key features include: - Execute SQL queries directly against Apple Health data using DuckDB for fast, efficient analysis - Natural language querying that translates questions into database queries - Automated generation of weekly and monthly health summaries - Efficient data loading with lazy loading and configurable time windows - Smart query result caching with TTL for improved performance - Support for CSV exports from the Simple Health Export CSV iOS app

README

Apple Health MCP Server

[](https://badge.fury.io/js/@neiltron%2Fapple-health-mcp) [](https://opensource.org/licenses/MIT) An MCP (Model Context Protocol) server for querying Apple Health data using SQL. Built with DuckDB for fast, efficient health data analysis. > [!NOTE] > This project currently relies on the Simple Health Export CSV app by Eric Wolter. See Exporting Data below for more info on how best to use the app. > > This is currently the easiest way I could find to quickly and reliably get Apple Health data exported in CSV format. If you have ideas of better ways to import data, please submit an issue.

Features

  • Natural language querying: Your MCP client translates your questions to database queries
  • SQL Query Execution: Direct SQL queries against your Apple Health data
  • Automated Reports: Generate weekly/monthly health summaries
  • Efficient Data Loading: Lazy loading with configurable time windows
  • Smart Caching: Query result caching with TTL
  • Installation

    No installation required! Use directly with npx via Claude Desktop or other MCP clients.

    Usage with Claude Desktop

    Add to your Claude Desktop configuration (~/Library/Application Support/Claude/claude_desktop_config.json): ``json { "mcpServers": { "apple-health": { "command": "npx", "args": ["@neiltron/apple-health-mcp"], "env": { "HEALTH_DATA_DIR": "/path/to/your/health/export" } } } } `

    Environment Variables

  • HEALTH_DATA_DIR (required): Path to your Apple Health CSV export directory
  • MAX_MEMORY_MB (optional): Maximum memory usage in MB (default: 1024)
  • CACHE_SIZE (optional): Number of cached query results (default: 100)
  • Example Configuration

    `json { "mcpServers": { "apple-health": { "command": "npx", "args": ["@neiltron/apple-health-mcp"], "env": { "HEALTH_DATA_DIR": "/Users/yourname/Downloads/HealthAll_2025-07-202_01-04-39_SimpleHealthExportCSV", "MAX_MEMORY_MB": "2048" } } } } `

    Exporting Data

    To use get your data:
  • Download the Simple Health Export CSV app for iOS.
  • Tap the All button in the app to download all data for your desired time range (default 1 month).
  • When prompted, Airdrop it to your computer or transfer it some other way.
  • Unzip the file to your desired location
  • Set the HEALTH_DATA_DIR value in your MCP config. See Example Configuration above.
  • Available Tools

    1.
    health_schema: Get information about available tables and their structure 2. health_query: Execute SQL queries directly on your health data 3. health_report: Generate comprehensive health reports

    Data Structure

    The server expects Apple Health data exported as CSV files with the following naming pattern:
  • HKQuantityTypeIdentifier*.csv - Quantitative health metrics
  • HKCategoryTypeIdentifier*.csv - Categorical health data
  • HKWorkoutActivityType*.csv - Workout and activity data
  • Each CSV file should have these columns:
  • type: The specific health metric type
  • sourceName: Source device/app
  • startDate: Start timestamp (UTC)
  • endDate: End timestamp (UTC)
  • value: The measurement value
  • unit: Unit of measurement
  • Development

    For local development:
    `bash

    Clone and install dependencies

    git clone https://github.com/neiltron/apple-health-mcp.git cd apple-health-mcp npm install

    Build the project

    npm run build

    Type checking

    npm run typecheck
    `

    Troubleshooting

    Common Issues

    1. "No data found": Check that your CSV files are in the correct directory 2. Memory errors: Reduce
    MAX_MEMORY_MB or use shorter time windows 3. Slow queries: Ensure you're filtering by date ranges 4. Missing tables: Table names are lowercase (e.g., hkquantitytypeidentifierheartrate`)

    Contributing

    Contributions are welcome! Please ensure:
  • Code follows existing patterns
  • TypeScript types are properly defined
  • Error handling is comprehensive
  • Performance impact is considered
  • License

    MIT

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